{"id":1297,"date":"2023-11-28T15:41:18","date_gmt":"2023-11-28T07:41:18","guid":{"rendered":"https:\/\/insyb.apbionet.org\/insyb23\/?p=1297"},"modified":"2023-11-28T15:48:13","modified_gmt":"2023-11-28T07:48:13","slug":"low-wai-yee","status":"publish","type":"post","link":"https:\/\/insyb.apbionet.org\/insyb23\/low-wai-yee\/","title":{"rendered":"Low Wai Yee"},"content":{"rendered":"\n<figure class=\"wp-block-image size-large is-resized\"><img decoding=\"async\" loading=\"lazy\" width=\"1024\" height=\"898\" src=\"https:\/\/insyb.apbionet.org\/insyb23\/wp-content\/uploads\/2023\/11\/Lloyd_profile_at_Davies-1-1024x898.jpg\" alt=\"\" class=\"wp-image-1302\" style=\"aspect-ratio:1.1403118040089086;width:315px;height:auto\"\/><\/figure>\n\n\n\n<p><strong>Invited Talk Title:<\/strong><\/p>\n\n\n\n<p>To snake or to flow: comparison of Snakemake and Nextflow<\/p>\n\n\n\n<p><strong>Abstract:<\/strong><\/p>\n\n\n\n<p>Computational pipelines are integral in bioinformatics, particularly for high-throughput sequenced data. While traditional Shell scripting is a common method, alternatives like Snakemake and Nextflow have gained popularity. Notably, the verkko assembler for assembling complete human telomere-to-telomere genomes uses a Snakemake pipeline. This workshop addresses common queries such as the choice between Shell scripting and workflow management systems like Snakemake or Nextflow. By demonstrating variant calling with both Shell scripts and these systems, the workshop provides insights into factors to consider, including scalability. Pros and cons of each method underscore the idea that the optimal approach depends on specific task requirements and features.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Invited Talk Title: To snake or to flow: comparison of Snakemake and Nextflow Abstract: Computational pipelines are integral in bioinformatics, particularly for high-throughput sequenced data. While traditional Shell scripting is a common method, alternatives like Snakemake and Nextflow have gained popularity. Notably, the verkko assembler for assembling complete human telomere-to-telomere genomes uses a Snakemake pipeline. &#8230; <a title=\"Low Wai Yee\" class=\"read-more\" href=\"https:\/\/insyb.apbionet.org\/insyb23\/low-wai-yee\/\" aria-label=\"More on Low Wai Yee\">Read more<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[1],"tags":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v20.8 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Low Wai Yee - 7th International Symposium on Bioinformatics 2023<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/insyb.apbionet.org\/insyb23\/low-wai-yee\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Low Wai Yee - 7th International Symposium on Bioinformatics 2023\" \/>\n<meta property=\"og:description\" content=\"Invited Talk Title: To snake or to flow: comparison of Snakemake and Nextflow Abstract: Computational pipelines are integral in bioinformatics, particularly for high-throughput sequenced data. 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